STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_036744-oxalocrotonate tautomerase family enzyme. (70 aa)    
Predicted Functional Partners:
C806_03673
Hypothetical protein.
 
     0.891
C806_04129
Hypothetical protein.
  
     0.748
C806_02075
Hypothetical protein.
  
     0.746
C806_03676
Hypothetical protein.
       0.731
C806_02076
Hypothetical protein.
  
     0.727
C806_03675
Hypothetical protein.
       0.714
C806_02378
Hemerythrin-like metal-binding domain-containing protein.
  
 
   0.691
C806_02579
Hypothetical protein.
    
 0.671
C806_04227
Hypothetical protein.
  
     0.661
C806_03918
Hypothetical protein.
  
     0.659
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.