Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04080Hypothetical protein. (293 aa)    
Predicted Functional Partners:
C806_01151
Hypothetical protein.
  
     0.595
C806_01174
Hypothetical protein.
  
     0.586
C806_00577
Hypothetical protein.
  
    0.504
C806_04079
Hypothetical protein.
       0.485
C806_02580
Hypothetical protein.
 
 
 0.461
C806_03150
Hypothetical protein.
  
     0.422
C806_00268
Precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.
   
    0.414
C806_04078
DNA polymerase III, alpha subunit.
     
 0.405
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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