C806_04128 protein (Lachnospiraceae bacterium 31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C806_04128

Lactoylglutathione lyase. (123 aa)

Predicted Functional Partners:

C806_04452

0.965

C806_01465

0.893

trpB

0.867

C806_00842

0.852

C806_01200

0.850

C806_01047

0.849

dsdA

0.847

C806_01046

0.847

C806_01175

0.826

C806_01462

0.807

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C806_00842	C806_04128	C806_00842	C806_04128	Hypothetical protein.	Lactoylglutathione lyase.	0.852
C806_01046	C806_01047	C806_01046	C806_01047	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	0.999
C806_01046	C806_01200	C806_01046	C806_01200	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	Threonine ammonia-lyase.	0.898
C806_01046	C806_01462	C806_01046	C806_01462	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	Hypothetical protein.	0.704
C806_01046	C806_01465	C806_01046	C806_01465	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	Hypothetical protein.	0.847
C806_01046	C806_04128	C806_01046	C806_04128	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	Lactoylglutathione lyase.	0.847
C806_01046	C806_04452	C806_01046	C806_04452	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0.483
C806_01046	dsdA	C806_01046	C806_00009	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily.	0.865
C806_01046	trpB	C806_01046	C806_04675	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.847
C806_01047	C806_01046	C806_01047	C806_01046	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	0.999
C806_01047	C806_01200	C806_01047	C806_01200	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	Threonine ammonia-lyase.	0.893
C806_01047	C806_01462	C806_01047	C806_01462	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	Hypothetical protein.	0.704
C806_01047	C806_01465	C806_01047	C806_01465	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	Hypothetical protein.	0.847
C806_01047	C806_04128	C806_01047	C806_04128	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	Lactoylglutathione lyase.	0.849
C806_01047	C806_04452	C806_01047	C806_04452	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0.483
C806_01047	dsdA	C806_01047	C806_00009	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily.	0.865
C806_01047	trpB	C806_01047	C806_04675	L-serine dehydratase, iron-sulfur-dependent, alpha subunit.	Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.847
C806_01175	C806_04128	C806_01175	C806_04128	Hypothetical protein.	Lactoylglutathione lyase.	0.826
C806_01175	C806_04452	C806_01175	C806_04452	Hypothetical protein.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0.629
C806_01200	C806_01046	C806_01200	C806_01046	Threonine ammonia-lyase.	L-serine dehydratase, iron-sulfur-dependent, beta subunit.	0.898