Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_041701A family penicillin-binding protein. (907 aa)    
Predicted Functional Partners:
C806_02323
Hypothetical protein.
 
 
 0.959
C806_02218
Hypothetical protein.
 
 
 0.952
C806_02437
Hypothetical protein.
 
 
 0.901
C806_01034
Hypothetical protein.
 
 
 0.894
C806_02438
Hypothetical protein.
 
 
0.877
C806_01221
Hypothetical protein.
   
 
 0.775
C806_02673
Hypothetical protein.
     
 0.742
C806_02632
Hypothetical protein; Belongs to the peptidase S11 family.
   
 
 0.730
C806_02327
Hypothetical protein; Belongs to the SEDS family.
  
 
 
 0.729
C806_04178
Hypothetical protein.
 
  
 0.726
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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