Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04219Hypothetical protein. (327 aa)    
Predicted Functional Partners:
C806_04221
Hypothetical protein.
 
     0.894
C806_04220
Hypothetical protein.
 
     0.871
C806_05002
Hypothetical protein.
 
     0.755
C806_04254
Hypothetical protein.
  
     0.738
C806_04222
Type IV secretion system protein VirD4.
 
     0.733
C806_01595
Hypothetical protein.
  
     0.732
C806_04260
Hypothetical protein.
  
     0.717
C806_01598
Hypothetical protein.
  
     0.708
C806_04258
Hypothetical protein.
  
     0.707
C806_04253
Hypothetical protein.
  
     0.677
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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