Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04240Hypothetical protein. (60 aa)    
Predicted Functional Partners:
C806_04238
Hypothetical protein.
 
     0.877
C806_04239
Hypothetical protein.
 
     0.856
C806_03915
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.767
C806_04230
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.767
C806_05045
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.765
C806_04234
Hypothetical protein.
 
     0.744
C806_04235
Hypothetical protein.
 
     0.733
C806_05044
Hypothetical protein.
  
     0.731
C806_05043
Hypothetical protein.
  
     0.713
C806_03914
Hypothetical protein.
  
     0.696
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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