STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04253Hypothetical protein. (92 aa)    
Predicted Functional Partners:
C806_04254
Hypothetical protein.
 
     0.950
C806_04252
Hypothetical protein.
 
     0.923
C806_04249
Hypothetical protein.
 
     0.918
C806_04255
Hypothetical protein.
       0.791
C806_01595
Hypothetical protein.
 
     0.782
C806_04258
Hypothetical protein.
 
     0.759
C806_04260
Hypothetical protein.
 
     0.744
C806_04250
Hypothetical protein.
 
     0.742
C806_01598
Hypothetical protein.
 
     0.724
C806_04251
DNA (cytosine-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.720
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.