STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04299Hypothetical protein. (469 aa)    
Predicted Functional Partners:
C806_04300
Hypothetical protein.
 
     0.899
C806_04301
Hypothetical protein.
 
     0.859
C806_04302
Hypothetical protein.
 
     0.835
addA
Helicase-exonuclease AddAB, AddA subunit; ATP-dependent DNA helicase.
  
 0.807
C806_04298
Hypothetical protein.
   
  0.746
C806_04278
Sigma-70 family RNA polymerase sigma factor.
  
     0.686
C806_04320
Hypothetical protein.
  
     0.674
C806_02293
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.660
C806_01594
Hypothetical protein.
  
     0.614
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.609
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.