STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04327Hypothetical protein. (45 aa)    
Predicted Functional Partners:
C806_04325
Hypothetical protein.
 
     0.945
C806_04326
Hypothetical protein.
       0.773
C806_03656
Type IV secretion system protein VirD4.
 
     0.768
C806_01555
Type IV secretion system protein VirD4.
 
     0.764
C806_01588
Hypothetical protein.
 
     0.759
C806_05107
Type IV secretion system protein VirD4.
 
     0.755
C806_03688
Hypothetical protein.
 
     0.754
C806_03638
Type IV secretion system protein VirD4.
 
     0.753
C806_04248
Hypothetical protein.
 
     0.753
C806_04895
Type IV secretion system protein VirD4.
 
     0.753
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.