STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04447Hypothetical protein; Belongs to the UPF0102 family. (122 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
      0.805
C806_03974
Mg chelatase-like protein.
 
  
 0.760
C806_04448
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.746
C806_03973
DNA protecting protein DprA.
 
  
 0.705
C806_01875
comF family protein.
 
    0.655
C806_04446
FlhB domain-containing protein.
       0.591
C806_04449
Hypothetical protein.
 
     0.589
C806_04451
Diguanylate cyclase (GGDEF) domain-containing protein.
   
    0.539
C806_03810
Hypothetical protein.
   
    0.534
C806_04443
Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.504
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.