STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04459Hypothetical protein; Belongs to the glycosyl hydrolase 31 family. (694 aa)    
Predicted Functional Partners:
C806_01908
Hypothetical protein; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.900
C806_04525
Hypothetical protein.
 
  
 0.890
C806_01071
4-alpha-glucanotransferase.
    
 0.882
C806_03427
Hypothetical protein.
  
  
 0.881
C806_03426
Hypothetical protein.
     
 0.859
C806_02930
Hypothetical protein.
 
  
 0.821
C806_02649
Hypothetical protein.
    
 
 0.779
C806_00012
Hypothetical protein.
    
  0.776
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.732
C806_01947
Hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
 
 0.731
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.