STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCHypothetical protein. (462 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.994
C806_04535
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.901
C806_04541
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.894
C806_03278
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.843
C806_03276
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.839
C806_04540
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
   
 0.792
C806_04669
2-dehydro-3-deoxygluconokinase.
 
   
 0.761
C806_01328
Hypothetical protein.
 
 
 0.742
C806_04670
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.740
C806_04646
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.668
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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