STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04548Stage V sporulation protein B. (445 aa)    
Predicted Functional Partners:
C806_02547
Sporulation protein YqfD.
 
   
 0.788
C806_02346
Stage II sporulation protein P.
  
   
 0.757
C806_01083
Stage III sporulation protein AE.
  
  
 0.724
C806_01916
Sporulation protein YabP.
 
   
 0.721
C806_01073
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.711
C806_01405
Sporulation integral membrane protein YlbJ.
  
   
 0.706
C806_01086
Hypothetical protein.
  
  
 0.697
C806_01082
Stage III sporulation protein AD.
  
  
 0.694
C806_01912
Stage II sporulation protein E.
  
   
 0.692
C806_03791
Stage IV sporulation protein B.
  
     0.675
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.