C806_04658 protein (Lachnospiraceae bacterium 31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C806_04658

Hypothetical protein. (235 aa)

Predicted Functional Partners:

C806_04657

0.942

C806_04659

0.773

C806_04652

0.573

C806_02470

0.548

C806_04552

0.522

C806_04551

0.516

C806_01651

0.510

C806_01653

0.510

C806_00443

0.481

C806_01136

0.481

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C806_00443	C806_01136	ABC transporter ATP-binding protein.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.616
C806_00443	C806_01651	ABC transporter ATP-binding protein.	Molybdenum cofactor biosynthesis protein C.	0.618
C806_00443	C806_01653	ABC transporter ATP-binding protein.	Molybdate ABC transporter, permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.522
C806_00443	C806_02470	ABC transporter ATP-binding protein.	His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.	0.845
C806_00443	C806_04551	ABC transporter ATP-binding protein.	Zinc transport system permease.	0.634
C806_00443	C806_04552	ABC transporter ATP-binding protein.	Zinc transport system ATP-binding protein.	0.531
C806_00443	C806_04657	ABC transporter ATP-binding protein.	Hypothetical protein.	0.481
C806_00443	C806_04658	ABC transporter ATP-binding protein.	Hypothetical protein.	0.481
C806_01136	C806_00443	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein.	0.616
C806_01136	C806_01651	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Molybdenum cofactor biosynthesis protein C.	0.838
C806_01136	C806_01653	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Molybdate ABC transporter, permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.808
C806_01136	C806_02470	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.	0.936
C806_01136	C806_04551	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Zinc transport system permease.	0.880
C806_01136	C806_04552	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Zinc transport system ATP-binding protein.	0.810
C806_01136	C806_04652	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.616
C806_01136	C806_04657	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.481
C806_01136	C806_04658	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.481
C806_01651	C806_00443	Molybdenum cofactor biosynthesis protein C.	ABC transporter ATP-binding protein.	0.618
C806_01651	C806_01136	Molybdenum cofactor biosynthesis protein C.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.838
C806_01651	C806_01653	Molybdenum cofactor biosynthesis protein C.	Molybdate ABC transporter, permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.997