C806_04662 protein (Lachnospiraceae bacterium 31)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Score

C806_04662

Hypothetical protein. (410 aa)

Predicted Functional Partners:

C806_00610

0.897

C806_01267

0.897

C806_04661

0.761

C806_04660

0.692

rsmA

0.584

C806_01849

0.584

C806_03464

0.559

rpsD

0.557

C806_02550

0.535

C806_01089

0.496

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C806_00610	C806_01849	C806_00610	C806_01849	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Hypothetical protein.	0.793
C806_00610	C806_04662	C806_00610	C806_04662	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Hypothetical protein.	0.897
C806_00610	rpsD	C806_00610	C806_00705	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.901
C806_00610	rsmA	C806_00610	C806_00602	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.830
C806_01089	C806_03464	C806_01089	C806_03464	Hypothetical protein.	Hypothetical protein.	0.456
C806_01089	C806_04662	C806_01089	C806_04662	Hypothetical protein.	Hypothetical protein.	0.496
C806_01089	rpsD	C806_01089	C806_00705	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.782
C806_01267	C806_01849	C806_01267	C806_01849	Hypothetical protein.	Hypothetical protein.	0.793
C806_01267	C806_04662	C806_01267	C806_04662	Hypothetical protein.	Hypothetical protein.	0.897
C806_01267	rpsD	C806_01267	C806_00705	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.901
C806_01267	rsmA	C806_01267	C806_00602	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.793
C806_01849	C806_00610	C806_01849	C806_00610	Hypothetical protein.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.793
C806_01849	C806_01267	C806_01849	C806_01267	Hypothetical protein.	Hypothetical protein.	0.793
C806_01849	C806_04662	C806_01849	C806_04662	Hypothetical protein.	Hypothetical protein.	0.584
C806_01849	rpsD	C806_01849	C806_00705	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.953
C806_02550	C806_04662	C806_02550	C806_04662	Hypothetical protein.	Hypothetical protein.	0.535
C806_03464	C806_01089	C806_03464	C806_01089	Hypothetical protein.	Hypothetical protein.	0.456
C806_03464	C806_04662	C806_03464	C806_04662	Hypothetical protein.	Hypothetical protein.	0.559
C806_03464	rpsD	C806_03464	C806_00705	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.790
C806_04660	C806_04661	C806_04660	C806_04661	Hypothetical protein.	Hypothetical protein.	0.951