Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04682Hypothetical protein. (514 aa)    
Predicted Functional Partners:
C806_04681
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 
  0.985
C806_04460
Hypothetical protein.
 
0.949
C806_00390
Hypothetical protein.
 
  0.931
C806_00308
Hypothetical protein.
 
  0.891
C806_00391
Hypothetical protein.
  
 
 
0.880
C806_00393
Hypothetical protein.
 
 0.876
C806_03754
Hypothetical protein.
 
  0.832
C806_02950
Hypothetical protein.
 
  0.818
C806_01691
Hypothetical protein.
  
  0.811
C806_04293
Hypothetical protein.
  
  0.811
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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