Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04683Hypothetical protein. (309 aa)    
Predicted Functional Partners:
C806_04681
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
       0.773
C806_04682
Hypothetical protein.
       0.773
C806_02833
Hypothetical protein; Belongs to the MT-A70-like family.
     
  0.680
C806_03031
Hypothetical protein; Belongs to the MT-A70-like family.
     
  0.680
C806_04323
Hypothetical protein; Belongs to the MT-A70-like family.
     
  0.680
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.675
C806_04684
Hypothetical protein.
       0.675
C806_04680
Hypothetical protein.
       0.664
C806_03520
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
   0.507
C806_04730
Hypothetical protein.
    
   0.507
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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