STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04742Hypothetical protein. (99 aa)    
Predicted Functional Partners:
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.855
C806_02289
Hypothetical protein.
  
     0.774
C806_04274
Hypothetical protein.
  
     0.742
C806_01612
Hypothetical protein.
  
     0.740
C806_01611
Sigma-70 family RNA polymerase sigma factor.
  
     0.735
C806_02103
Excisionase family DNA binding domain-containing protein.
  
     0.714
C806_04273
Sigma-70 family RNA polymerase sigma factor.
  
     0.706
C806_01715
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.655
C806_04743
Hypothetical protein.
 
     0.642
C806_02102
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.640
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.