Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04875HK97 family phage major capsid protein. (406 aa)    
Predicted Functional Partners:
C806_04877
HK97 family phage portal protein.
 
 
 
 0.952
C806_04876
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Belongs to the peptidase S14 family.
 
    0.850
C806_00760
HK97 family phage portal protein.
 
 
 
 0.830
C806_00799
HK97 family phage portal protein.
 
 
 
 0.828
C806_01508
HK97 family phage portal protein.
 
 
 
 0.828
C806_05069
HK97 family phage portal protein.
 
 
 
 0.828
C806_04873
Hypothetical protein.
  
   0.827
C806_04874
Hypothetical protein.
  
   0.810
C806_04869
Hypothetical protein.
       0.734
C806_04870
Phi13 family phage major tail protein.
       0.734
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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