STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_04881Hypothetical protein. (731 aa)    
Predicted Functional Partners:
C806_04882
Hypothetical protein.
 
   
 0.952
C806_04883
Hypothetical protein.
 
   
 0.889
C806_02022
Hypothetical protein.
  
  
 0.584
C806_02470
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
     
  0.572
C806_01136
Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
     
  0.565
C806_01906
Hypothetical protein.
     
  0.527
C806_01907
Hypothetical protein.
     
  0.527
ecfA
Cobalt/nickel transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
  0.508
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
  0.508
C806_00506
Multiple sugar transport system permease; Overlaps another CDS with the same product name.
     
  0.410
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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