STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_05087Type IV secretion system protein VirD4. (149 aa)    
Predicted Functional Partners:
C806_05050
Hypothetical protein.
 
     0.974
C806_03923
Type IV secretion system protein VirD4.
 
     0.971
C806_05137
Type IV secretion system protein VirD4.
 
     0.958
C806_03656
Type IV secretion system protein VirD4.
 
     0.938
C806_04222
Type IV secretion system protein VirD4.
 
     0.901
C806_01555
Type IV secretion system protein VirD4.
 
     0.891
C806_05107
Type IV secretion system protein VirD4.
 
     0.809
C806_03638
Type IV secretion system protein VirD4.
 
     0.786
C806_03690
Hypothetical protein.
 
    0.755
C806_01590
Hypothetical protein.
 
    0.751
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.