Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_00124Chromosome partitioning protein. (275 aa)    
Predicted Functional Partners:
C810_00123
ParB-like partition protein; Belongs to the ParB family.
 
   0.962
C810_04834
ParB-like partition protein; Belongs to the ParB family.
 
 
 0.950
C810_02818
ParB-like partition protein; Belongs to the ParB family.
 
   0.834
C810_02389
ParB-like partition protein; Belongs to the ParB family.
 
   0.826
C810_03631
ParB-like partition protein; Belongs to the ParB family.
 
   0.826
C810_04798
ParB-like partition protein; Belongs to the ParB family.
 
   0.819
C810_04636
ParB-like partition protein; Belongs to the ParB family.
 
   0.810
C810_00485
ParB-like partition protein; Belongs to the ParB family.
 
   0.775
C810_00122
Hypothetical protein.
       0.768
C810_03663
ParB-like partition protein; Belongs to the ParB family.
 
   0.751
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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