Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_00331Hypothetical protein. (268 aa)    
Predicted Functional Partners:
C810_00330
Hypothetical protein.
 
 0.995
C810_00332
Hypothetical protein.
 
 0.994
C810_01953
Hypothetical protein.
 
 0.958
C810_01929
Hypothetical protein.
  
 0.957
C810_01959
Hypothetical protein.
  
 0.936
C810_00333
Hypothetical protein.
       0.693
C810_04775
Ammonium transporter; Belongs to the P(II) protein family.
   
 
 0.681
C810_01952
Hypothetical protein.
  
     0.622
C810_04124
Zinc transport system permease.
  
  
 0.581
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
    
  0.512
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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