Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_00532Hypothetical protein. (254 aa)    
Predicted Functional Partners:
C810_04036
Lactoylglutathione lyase.
  
 0.678
C810_00785
Exonuclease, DNA polymerase III, epsilon subunit.
    
 0.676
C810_02288
Hypothetical protein.
 
 0.644
C810_04371
Hypothetical protein.
  
 0.640
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
     
  0.625
rplJ
Large subunit ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
     
  0.616
C810_01536
Hypothetical protein; Belongs to the TtcA family.
  
 0.615
C810_01871
Hypothetical protein.
     
 0.607
C810_03295
Hypothetical protein.
   
  0.606
C810_03790
Flagellar operon protein.
   
  0.606
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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