Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_00539Hypothetical protein. (124 aa)    
Predicted Functional Partners:
C810_00544
Hypothetical protein.
 
  
  0.879
C810_04124
Zinc transport system permease.
  
 
 0.829
C810_00545
Hypothetical protein.
    
 0.827
C810_00540
MATE efflux family protein.
  
    0.762
C810_01764
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.
  
 
  0.742
C810_00541
Hypothetical protein.
       0.741
C810_00542
Hypothetical protein.
       0.741
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
  0.734
C810_01790
Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
     
  0.733
C810_01943
Oligopeptide transport system substrate-binding protein.
     
  0.733
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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