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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C810_00544Hypothetical protein. (474 aa)    
Predicted Functional Partners:
C810_00545
Hypothetical protein.
 
 0.998
C810_00468
Hypothetical protein.
 
 0.975
C810_00546
Hypothetical protein.
 
     0.956
C810_00543
Hypothetical protein.
 
     0.941
C810_04383
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain; Belongs to the ABC transporter superfamily.
 
 
0.846
C810_01941
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain; Belongs to the ABC transporter superfamily.
  
 
0.833
C810_02559
Hypothetical protein.
  
 
0.833
C810_04385
Hypothetical protein.
 
 
 0.830
C810_04384
Peptide/nickel transport system permease.
 
 0.826
C810_01943
Oligopeptide transport system substrate-binding protein.
  
 
 0.807
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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