C810_00583 protein (Lachnospiraceae bacterium A2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Lachnospiraceae bacterium A2

NCBI taxonomy Id: 397290
Other names: L. bacterium A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C810_00483	C810_00583	C810_00483	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.762
C810_00498	C810_00583	C810_00498	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.756
C810_00523	C810_00583	C810_00523	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.757
C810_00582	C810_00583	C810_00582	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.945
C810_00583	C810_00483	C810_00583	C810_00483	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.762
C810_00583	C810_00498	C810_00583	C810_00498	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.756
C810_00583	C810_00523	C810_00583	C810_00523	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.757
C810_00583	C810_00582	C810_00583	C810_00582	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.945
C810_00583	C810_03709	C810_00583	C810_03709	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.758
C810_00583	C810_04549	C810_00583	C810_04549	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.757
C810_00583	C810_04621	C810_00583	C810_04621	Sigma-70 family RNA polymerase sigma factor.	Hypothetical protein.	0.765
C810_00583	rpoB	C810_00583	C810_03368	Sigma-70 family RNA polymerase sigma factor.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.781
C810_00583	rpoC	C810_00583	C810_03369	Sigma-70 family RNA polymerase sigma factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.781
C810_00583	rpoZ	C810_00583	C810_02763	Sigma-70 family RNA polymerase sigma factor.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.757
C810_03709	C810_00583	C810_03709	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.758
C810_04549	C810_00583	C810_04549	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.757
C810_04621	C810_00583	C810_04621	C810_00583	Hypothetical protein.	Sigma-70 family RNA polymerase sigma factor.	0.765
rpoB	C810_00583	C810_03368	C810_00583	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma-70 family RNA polymerase sigma factor.	0.781
rpoB	rpoC	C810_03368	C810_03369	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	C810_03368	C810_02763	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.994