Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
C810_01013L-ribulose-5-phosphate 4-epimerase. (221 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.915
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.912
C810_05069
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.891
C810_00674
L-ribulose-5-phosphate 4-epimerase.
  
  
 
0.864
C810_01012
Hypothetical protein.
 
  
 0.853
C810_00677
Hypothetical protein.
   
    0.843
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
    
 0.808
C810_01011
PTS system, galactitol-specific IIC component.
 
   
 0.807
C810_04328
Fructose-1,6-bisphosphate aldolase, class II.
    
 0.794
C810_04161
Hypothetical protein.
  
 
 0.770
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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