STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C810_010234-oxalocrotonate tautomerase family enzyme. (70 aa)    
Predicted Functional Partners:
C810_01022
Hypothetical protein.
 
     0.878
C810_03232
Hypothetical protein.
  
     0.737
C810_04037
Hypothetical protein.
  
     0.730
C810_03233
Hypothetical protein.
  
     0.725
C810_01024
Hypothetical protein.
       0.693
C810_04794
Hypothetical protein.
  
     0.666
C810_03024
Hemerythrin-like metal-binding domain-containing protein.
  
 
   0.653
C810_04791
MutG family lantibiotic protection ABC transporter permease subunit.
  
     0.619
C810_00478
Hypothetical protein.
  
     0.617
C810_00538
Hypothetical protein.
  
     0.616
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.