Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C810_01008 | C810_01184 | C810_01008 | C810_01184 | Cof-like hydrolase. | Cof-like hydrolase. | 0.499 |
C810_01008 | C810_02274 | C810_01008 | C810_02274 | Cof-like hydrolase. | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 0.516 |
C810_01008 | C810_03944 | C810_01008 | C810_03944 | Cof-like hydrolase. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.747 |
C810_01008 | ribBA | C810_01008 | C810_03946 | Cof-like hydrolase. | GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.616 |
C810_01008 | ribH | C810_01008 | C810_03947 | Cof-like hydrolase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.702 |
C810_01184 | C810_01008 | C810_01184 | C810_01008 | Cof-like hydrolase. | Cof-like hydrolase. | 0.499 |
C810_01184 | C810_01185 | C810_01184 | C810_01185 | Cof-like hydrolase. | Hypothetical protein. | 0.429 |
C810_01184 | C810_02274 | C810_01184 | C810_02274 | Cof-like hydrolase. | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 0.463 |
C810_01184 | C810_02953 | C810_01184 | C810_02953 | Cof-like hydrolase. | Cof-like hydrolase. | 0.504 |
C810_01184 | C810_03944 | C810_01184 | C810_03944 | Cof-like hydrolase. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.747 |
C810_01184 | C810_04182 | C810_01184 | C810_04182 | Cof-like hydrolase. | Hypothetical protein. | 0.405 |
C810_01184 | ribBA | C810_01184 | C810_03946 | Cof-like hydrolase. | GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.616 |
C810_01184 | ribH | C810_01184 | C810_03947 | Cof-like hydrolase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.415 |
C810_01185 | C810_01184 | C810_01185 | C810_01184 | Hypothetical protein. | Cof-like hydrolase. | 0.429 |
C810_02274 | C810_01008 | C810_02274 | C810_01008 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Cof-like hydrolase. | 0.516 |
C810_02274 | C810_01184 | C810_02274 | C810_01184 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Cof-like hydrolase. | 0.463 |
C810_02274 | C810_02953 | C810_02274 | C810_02953 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Cof-like hydrolase. | 0.516 |
C810_02274 | C810_03944 | C810_02274 | C810_03944 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.821 |
C810_02274 | ribBA | C810_02274 | C810_03946 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.926 |
C810_02274 | ribH | C810_02274 | C810_03947 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.908 |
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