Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_01201Hypothetical protein. (84 aa)    
Predicted Functional Partners:
C810_01198
Hypothetical protein.
 
   
 0.786
C810_01274
Excisionase family DNA binding domain-containing protein.
 
   
 0.786
C810_01199
Hypothetical protein.
  
     0.773
C810_03844
Hypothetical protein.
  
     0.769
C810_01529
Excisionase family DNA binding domain-containing protein.
 
     0.724
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.710
C810_01082
Sigma-70 family RNA polymerase sigma factor.
  
     0.699
C810_01202
Hypothetical protein.
       0.686
C810_01319
Excisionase family DNA binding domain-containing protein.
 
     0.658
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
  0.653
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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