Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_01231DNA polymerase bacteriophage-type. (642 aa)    
Predicted Functional Partners:
C810_01234
Hypothetical protein.
 
     0.942
C810_01236
Hypothetical protein.
 
     0.929
C810_01230
Hypothetical protein.
 
     0.918
C810_01228
Hypothetical protein.
 
   
 0.915
C810_01229
Hypothetical protein.
 
     0.913
C810_01237
Hypothetical protein.
 
     0.903
C810_01239
Hypothetical protein.
 
 
 0.869
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.834
C810_01227
Hypothetical protein.
 
     0.795
C810_01242
Hypothetical protein.
 
     0.785
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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