Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_01409Hypothetical protein. (107 aa)    
Predicted Functional Partners:
C810_01410
Hypothetical protein.
       0.757
C810_01411
Hypothetical protein.
       0.757
C810_01408
Hypothetical protein.
       0.741
C810_01407
Hypothetical protein.
       0.648
C810_01412
Rha family phage regulatory protein.
       0.586
C810_01413
Hypothetical protein.
       0.586
C810_01414
Hypothetical protein.
       0.557
C810_01405
Hypothetical protein.
       0.538
C810_01406
Hypothetical protein.
       0.538
C810_01404
Hypothetical protein.
       0.512
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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