C810_01693 protein (Lachnospiraceae bacterium A2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C810_01693

Hypothetical protein; Belongs to the bacterial histone-like protein family. (95 aa)

Predicted Functional Partners:

rplS

0.859

C810_04686

0.851

priA

0.827

dnaG

0.826

C810_02436

0.823

C810_04579

0.823

C810_02716

0.795

dnaA

0.795

C810_03789

0.786

C810_04759

0.768

Your Current Organism:

Lachnospiraceae bacterium A2

NCBI taxonomy Id: 397290
Other names: L. bacterium A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C810_01693	C810_02436	C810_01693	C810_02436	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Phage/plasmid primase, P4 family domain-containing protein.	0.823
C810_01693	C810_02716	C810_01693	C810_02716	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Hypothetical protein.	0.795
C810_01693	C810_03789	C810_01693	C810_03789	Hypothetical protein; Belongs to the bacterial histone-like protein family.	comF family protein.	0.786
C810_01693	C810_04579	C810_01693	C810_04579	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Phage/plasmid primase, P4 family domain-containing protein.	0.823
C810_01693	C810_04686	C810_01693	C810_04686	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	0.851
C810_01693	C810_04759	C810_01693	C810_04759	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Hypothetical protein.	0.768
C810_01693	dnaA	C810_01693	C810_04845	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.795
C810_01693	dnaG	C810_01693	C810_04054	Hypothetical protein; Belongs to the bacterial histone-like protein family.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.826
C810_01693	priA	C810_01693	C810_05078	Hypothetical protein; Belongs to the bacterial histone-like protein family.	Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.	0.827
C810_01693	rplS	C810_01693	C810_04959	Hypothetical protein; Belongs to the bacterial histone-like protein family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.859
C810_02436	C810_01693	C810_02436	C810_01693	Phage/plasmid primase, P4 family domain-containing protein.	Hypothetical protein; Belongs to the bacterial histone-like protein family.	0.823
C810_02436	C810_03789	C810_02436	C810_03789	Phage/plasmid primase, P4 family domain-containing protein.	comF family protein.	0.645
C810_02436	C810_04579	C810_02436	C810_04579	Phage/plasmid primase, P4 family domain-containing protein.	Phage/plasmid primase, P4 family domain-containing protein.	0.814
C810_02436	C810_04686	C810_02436	C810_04686	Phage/plasmid primase, P4 family domain-containing protein.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	0.943
C810_02436	C810_04759	C810_02436	C810_04759	Phage/plasmid primase, P4 family domain-containing protein.	Hypothetical protein.	0.846
C810_02436	dnaG	C810_02436	C810_04054	Phage/plasmid primase, P4 family domain-containing protein.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.580
C810_02436	priA	C810_02436	C810_05078	Phage/plasmid primase, P4 family domain-containing protein.	Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.	0.819
C810_02716	C810_01693	C810_02716	C810_01693	Hypothetical protein.	Hypothetical protein; Belongs to the bacterial histone-like protein family.	0.795
C810_02716	C810_04686	C810_02716	C810_04686	Hypothetical protein.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	0.885
C810_02716	priA	C810_02716	C810_05078	Hypothetical protein.	Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.	0.531