Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02112Hypothetical protein. (210 aa)    
Predicted Functional Partners:
C810_02800
Sporulation protein YqfC.
  
   
 0.775
C810_03503
Hypothetical protein.
  
     0.757
C810_00264
Hypothetical protein.
  
     0.736
C810_01565
Hypothetical protein.
  
     0.707
C810_04176
Hypothetical protein.
  
     0.705
C810_02489
Hypothetical protein.
  
     0.689
C810_03002
Stage II sporulation protein P.
  
   
 0.686
C810_04198
Hypothetical protein.
  
     0.685
xerC
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.669
C810_03295
Hypothetical protein.
  
     0.660
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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