Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02151Hypothetical protein. (402 aa)    
Predicted Functional Partners:
C810_04296
Hypothetical protein.
 
  0.851
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.824
C810_00782
Hypothetical protein.
 
  
  0.786
C810_01144
Hypothetical protein.
 
 
   0.776
C810_02150
Hypothetical protein.
       0.773
C810_01576
Hypothetical protein.
  
  
  0.767
C810_01883
Hypothetical protein.
  
     0.753
C810_03239
Hypothetical protein.
  
     0.722
C810_04506
Hypothetical protein.
  
   0.675
C810_05140
Hypothetical protein.
  
     0.661
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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