Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02400Hypothetical protein. (259 aa)    
Predicted Functional Partners:
C810_02399
Hypothetical protein.
     0.987
C810_02401
Hypothetical protein.
 
     0.949
C810_03566
Hypothetical protein.
 
     0.789
C810_02402
Hypothetical protein.
       0.785
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
  0.744
C810_04071
Hypothetical protein.
  
    0.558
C810_02398
Hypothetical protein.
       0.557
C810_04906
Hypothetical protein.
  
    0.548
C810_05180
Hypothetical protein.
  
    0.548
C810_05181
Hypothetical protein.
  
    0.532
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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