Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02435Hypothetical protein. (218 aa)    
Predicted Functional Partners:
C810_02436
Phage/plasmid primase, P4 family domain-containing protein.
 
  
  0.912
C810_04686
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 0.911
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
     
  0.716
C810_00733
DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family.
    
 0.689
C810_01693
Hypothetical protein; Belongs to the bacterial histone-like protein family.
    
 0.689
C810_03273
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
 
 
 0.677
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
   0.670
C810_00785
Exonuclease, DNA polymerase III, epsilon subunit.
    
 0.660
C810_04039
Hypothetical protein.
    
 0.650
C810_04759
Hypothetical protein.
    
  0.649
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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