Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02447Hypothetical protein. (128 aa)    
Predicted Functional Partners:
C810_02768
Hypothetical protein.
 
  
 0.785
C810_04564
GntR family transcriptional regulator.
  
     0.751
C810_00277
Hypothetical protein.
  
     0.732
C810_02769
Hypothetical protein.
 
  
 0.729
C810_03707
Hypothetical protein.
  
     0.646
C810_03782
Flagellar hook-basal body protein.
   
    0.598
C810_03704
Hypothetical protein.
 
    0.570
C810_02037
Hypothetical protein.
 
    0.569
C810_04565
ABC transporter ATP-binding protein.
 
    0.563
C810_02448
ABC transporter ATP-binding protein.
  
    0.523
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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