Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02452Hypothetical protein. (90 aa)    
Predicted Functional Partners:
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.887
C810_01081
Hypothetical protein.
  
     0.719
C810_01082
Sigma-70 family RNA polymerase sigma factor.
  
     0.712
C810_03844
Hypothetical protein.
  
     0.673
C810_01198
Hypothetical protein.
  
     0.657
C810_03843
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.625
C810_01199
Hypothetical protein.
  
     0.610
C810_02451
Two-component system, NarL family, secretion system response regulator SalR.
   
  0.567
C810_01529
Excisionase family DNA binding domain-containing protein.
  
     0.565
C810_01320
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.564
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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