Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02462Hypothetical protein. (602 aa)    
Predicted Functional Partners:
C810_02463
Hypothetical protein.
 
 
 0.993
C810_03158
Hypothetical protein.
 
 
 0.946
C810_01294
Hypothetical protein.
 
 
 0.905
C810_01215
Hypothetical protein.
 
 
 0.902
C810_01208
Hypothetical protein.
 
 
 0.899
C810_03686
Hypothetical protein.
 
 
 0.879
C810_04502
Hypothetical protein.
 
 
 0.852
C810_02456
Hypothetical protein.
 
  
 
0.736
C810_05032
Hypothetical protein.
 
 
 0.710
C810_00923
Hypothetical protein.
  
     0.662
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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