Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02484Hypothetical protein. (801 aa)    
Predicted Functional Partners:
C810_02504
Hypothetical protein.
 
  
 0.805
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
 
 
 0.741
C810_02485
Hypothetical protein; Belongs to the SEDS family.
       0.700
C810_02483
Hypothetical protein.
     
 0.698
C810_03050
NADH-quinone oxidoreductase subunit F.
  
   0.680
C810_03051
NADH-quinone oxidoreductase subunit E.
    
   0.674
C810_04682
Ferredoxin.
  
   0.653
C810_02486
Hypothetical protein.
       0.596
ruvB
Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.582
C810_02487
Hypothetical protein; Belongs to the Nudix hydrolase family.
       0.582
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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