Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02486Hypothetical protein. (487 aa)    
Predicted Functional Partners:
C810_02485
Hypothetical protein; Belongs to the SEDS family.
 0.998
C810_02223
Cell division protein FtsW; Belongs to the SEDS family.
 0.979
C810_02713
Hypothetical protein; Belongs to the SEDS family.
 0.979
C810_04307
1A family penicillin-binding protein.
 
 
 0.938
C810_02224
Hypothetical protein.
 
 0.935
C810_00737
Cell division protein FtsL.
 
 0.916
C810_00373
1A family penicillin-binding protein.
 
 
 0.905
C810_02041
Hypothetical protein.
  
 0.865
C810_02707
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.824
C810_02709
Hypothetical protein.
  
  
0.823
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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