Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02490Hypothetical protein. (146 aa)    
Predicted Functional Partners:
C810_02489
Hypothetical protein.
 
     0.834
C810_02488
Hypothetical protein.
 
     0.762
C810_01004
Hypothetical protein.
  
     0.726
C810_04645
Hypothetical protein.
  
     0.726
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.721
C810_01557
Hypothetical protein.
  
     0.716
C810_00167
Hypothetical protein.
  
     0.690
C810_04289
Carbohydrate diacid regulator.
  
     0.683
C810_03792
Hypothetical protein.
  
     0.681
C810_04477
Hypothetical protein.
  
     0.678
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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