Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02492DAK2 domain fusion protein YloV. (567 aa)    
Predicted Functional Partners:
C810_02491
Hypothetical protein.
 
  
 0.994
C810_02752
DegV family EDD domain-containing protein.
 
 0.987
C810_02174
DegV family EDD domain-containing protein.
 
 0.986
C810_01564
DegV family EDD domain-containing protein.
 
 
 0.942
C810_02493
ATP-dependent DNA helicase RecG.
  
    0.864
C810_02125
Hypothetical protein.
 
  
 0.722
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.633
C810_02134
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.614
C810_02989
Hypothetical protein.
   
    0.611
C810_02731
Hypothetical protein.
 
   
 0.478
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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