Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02604Hypothetical protein. (68 aa)    
Predicted Functional Partners:
C810_02603
Hypothetical protein.
 
     0.906
C810_01095
Hypothetical protein.
 
     0.663
C810_02605
Hypothetical protein.
 
     0.614
C810_02548
Hypothetical protein.
 
     0.564
C810_02545
Hypothetical protein.
 
     0.516
C810_01099
Hypothetical protein.
  
     0.504
C810_02602
Hypothetical protein.
       0.483
C810_03615
Hypothetical protein.
  
     0.472
C810_00577
Hypothetical protein.
  
     0.412
C810_04616
Hypothetical protein.
  
     0.406
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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