Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02799Sporulation protein YqfD. (420 aa)    
Predicted Functional Partners:
C810_02800
Sporulation protein YqfC.
 
  
 0.994
C810_02756
Sporulation integral membrane protein YlbJ.
 
   
 0.872
C810_00735
Sporulation protein YabP.
 
   
 0.845
C810_02798
Hypothetical protein.
       0.843
C810_02797
Hypothetical protein.
       0.838
C810_03002
Stage II sporulation protein P.
  
   
 0.820
C810_01001
Stage II sporulation protein R.
  
  
 0.815
C810_02091
Stage III sporulation protein AA.
  
  
 0.801
C810_02094
Stage III sporulation protein AD.
  
   
 0.792
C810_02080
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.787
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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