Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_02808Hypothetical protein. (88 aa)    
Predicted Functional Partners:
C810_02809
Spore coat protein JC.
 
  
 0.977
C810_02843
Spore coat protein JC.
 
  
 0.918
C810_02807
Hypothetical protein.
 
    0.878
C810_02017
Hypothetical protein.
  
  
 0.666
C810_02799
Sporulation protein YqfD.
 
     0.643
C810_00728
CotS family spore coat protein.
  
  
 0.634
C810_05074
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
   
    0.626
C810_02080
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.575
C810_02098
Hypothetical protein.
  
  
 0.567
C810_01003
Hypothetical protein.
  
     0.551
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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