Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03014Hypothetical protein. (331 aa)    
Predicted Functional Partners:
C810_03015
Hypothetical protein.
 
    0.933
C810_03013
Hypothetical protein.
 
     0.874
C810_03017
comEA protein.
  
    0.790
C810_03016
Hypothetical protein.
 
   
 0.787
C810_04477
Hypothetical protein.
  
   
 0.758
C810_02718
Hypothetical protein.
 
     0.757
C810_02708
Rod shape-determining protein MreD.
  
     0.754
C810_03792
Hypothetical protein.
  
     0.743
C810_03306
Hypothetical protein.
  
     0.741
C810_02483
Hypothetical protein.
  
     0.740
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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