Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C810_03050NADH-quinone oxidoreductase subunit F. (629 aa)    
Predicted Functional Partners:
C810_02056
Glutamate synthase (NADPH), homotetrameric.
 
 0.999
C810_03049
[FeFe] hydrogenase, group A.
 
 
 0.999
C810_03051
NADH-quinone oxidoreductase subunit E.
 0.999
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 0.999
C810_04682
Ferredoxin.
  
 0.998
C810_01848
Glutamate synthase, NADH/NADPH, small subunit.
 
 0.997
C810_02279
[FeFe] hydrogenase, group B1/B3.
 
 
 0.997
C810_00662
Hypothetical protein.
 
 
 0.996
C810_04487
Hypothetical protein.
   
 0.995
C810_00053
Hypothetical protein.
  
 
 0.986
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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